Phylogenetic summary of protein families
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Gene tree coverage and Gene QC (per species)
Quick links: Primates, Rodents etc.
Favourite species
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human (Homo sapiens) | 19856 | 19678 | 178 | 5 | 19673 | 471 | 2 | 75 | 95 | ||
| Mouse (Mus musculus reference (CL57BL6) strain) | 22029 | 21966 | 63 | 4 | 21962 | 1239 | 6 | 74 | 92 |
Primates
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human (Homo sapiens) | 19856 | 19678 | 178 | 5 | 19673 | 471 | 2 | 75 | 95 |
Rodents etc.
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse (Mus musculus reference (CL57BL6) strain) | 22029 | 21966 | 63 | 4 | 21962 | 1239 | 6 | 74 | 92 |
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