Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
74707
2471324980.527224.13.0
Bilateral animals (Bilateria)20
5060
2984253.0214697.51.8
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)104
624
2296.0111.06.0
Chordates (Chordata)78
99560
5543201276.4516176.63.7
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)137
41071
22615299.8215771.36.8
Lamprey (Petromyzon marinus)15
758
239550.5111.050.5
Jawed vertebrates (Gnathostomata)134
45259
189773337.8516186.12.9
Bony vertebrates (Euteleostomi)230
55608
26176241.8217260.46.7
Bony fishes (Actinopterygii)1
4
444.0333.01.3
Ray-finned fishes (Neopterygii)4
1135
219330283.832815.537.8
Osteoglossocephalai6
1609
8361268.252814.023.1
Teleost fishes (Clupeocephala)396
14716
239937.22355.012.7
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)5
58
24811.6111.011.6
Atlantic salmon (Salmo salar)634
3746
23845.9111.05.9
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Zebra mbuna (Maylandia zebra)5
18
273.6111.03.6
Goldfish (Carassius auratus)4
1398
232398349.5111.0349.5
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Atlantic cod (Gadus morhua)16
57
293.6111.03.6
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Lumpfish (Cyclopterus lumpus)4
407
2355101.8111.0101.8
Zebrafish (Danio rerio)40
1468
238636.7111.036.7
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)9
1119
2395124.3111.0124.3
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Turbot (Scophthalmus maximus)40
11134
13400278.4111.0278.4
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Rainbow trout (Oncorhynchus mykiss)30
7021
2389234.0111.0234.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Huchen (Hucho hucho)1
2
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)9
1658
2379184.2111.0184.2
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)43
11773
2654273.829343.615.2
Coelacanth (Latimeria chalumnae)4
867
2399216.8111.0216.8
Tetrapods (Tetrapoda)39
8434
2399216.3211455.88.8
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)148
27373
22326185.0210540.14.1
Mammals (Mammalia)11
1487
4354135.247745.32.7
Marsupials and Placental mammals (Theria)78
8557
2392109.727930.95.3
Placentals (Eutheria)8520
74826
217398.82874.61.3
Bonobo (Pan paniscus)1
2
222.0111.02.0
Guinea Pig (Cavia porcellus)2
615
221394307.5111.0307.5
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Sperm whale (Physeter catodon)3
7
232.3111.02.3
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Gibbon (Nomascus leucogenys)11
22
222.0111.02.0
Cat (Felis catus)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Leopard (Panthera pardus)1
249
249249249.0111.0249.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)1
2
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Domestic yak (Bos grunniens)1
2
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Human (Homo sapiens)78
180
282.3111.02.3
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Degu (Octodon degus)1
2
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Elephant (Loxodonta africana)6
20
263.3111.03.3
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)20
50
262.5111.02.5
Mouse Lemur (Microcebus murinus)4
8
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Dog (Canis lupus familiaris reference breed)24
70
2102.9111.02.9
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Rat (Rattus norvegicus strain BN/NHsdMcwi)2
4
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)156
496
2273.2111.03.2
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
White-tufted-ear marmoset (Callithrix jacchus)13
34
292.6111.02.6
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Horse (Equus caballus breed thoroughbred)11
31
252.8111.02.8
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Cow (Bos taurus reference breed)2
4
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Marsupials (Marsupialia)54
561
239110.4243.12.8
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Platypus (Ornithorhynchus anatinus)24
5912
2395246.3111.0246.3
Reptiles and birds (Sauria)265
801
2123.02123.01.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Australian saltwater crocodile (Crocodylus porosus)2
400
25375200.0111.0200.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)2
46
24423.0111.023.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Three-toed box turtle (Terrapene carolina triunguis)7
14
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
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