27 rodents Cactus

This alignment has been generated in Ensembl release 113 and is composed of 14,267,076 blocks (up to 10,662 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "CACTUS_DB" and the species_set_name "rodents".

Species	Assembly	Genome length (bp)	Genome coverage (bp)	Genome coverage (%)	Coding exon length (bp)	Coding exon coverage (bp)	Coding exon coverage (%)
Human (Homo sapiens)	GRCh38	3,099,750,718	873,203,988	28.17	35,953,383	27,715,981	77.09
Mouse (Mus musculus)	GRCm39	2,728,222,451	2,471,030,651	90.57	36,889,894	35,772,963	96.97

Block size distribution

Size range	All 14,267,076 alignment blocks
Size range	# blocks	Total size (incl. gaps)
10 bp - 100 bp	6,337,248	336.8 Mb
100 bp - 1 kb	7,677,378	2.2 Gb
1 kb - 10 kb	250,864	461.1 Mb
10 kb - 100 kb	1,586	15.9 Mb

27 rodents Cactus

API access

Block size distribution

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